Publications FY2018

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Publications

FY 2018

1) International collaborative papers (peer reviewed)

1.1) International collaborative papers co-authored with overseas affiliated universities：17

      i) Papers where “GI-CoRE” is stated as an affiliated institution

      ii) Papers which mention “Hokkaido University” in the acknowledgements.

  1. Latre De Late P, Haidar M, Ansari H, Tajeri S, Szarka E, Alexa A, Woods K, Remenyi A, Pain A, Langsley G: “Theileria highjacks JNK2 into a complex with the macroschizont GPI (GlycosylPhosphatidylInositol)-anchored surface protein p104”, Cell Microbiol, 21(3): e12973 (2019) i)
  2. Doyle SR, Illingworth CJR, Laing R, Bartley DJ, Redman E, Martinelli A, Holroyd N, Morrison AA, Rezansoff A, Tracey A, Devaney E, Berriman M, Sargison N, Cotton JA, Gilleard JS: “Population genomic and evolutionary modelling analyses reveal a single major QTL for ivermectin drug resistance in the pathogenic nematode, Haemonchus contortus”, BMC Genomics, 20(1): 218 (2019) i)
  3. GaithumaAK, Yamagishi J, Martinelli A, Hayashida K, Kawai N, Marsela M, Sugimoto C: “A single test approach for accurate and sensitive detection and taxonomic characterization of Trypanosomes by comprehensive analysis of internal transcribed spacer 1 amplicons”, PLoS Negl Trop Dis, 13(2): e0006842 (2019) i)
  4. Hu T, Li J, Carr MJ, Duchêne S, Shi W: “The Asian Lineage of Zika Virus: Transmission and Evolution in Asia and the Americas”, Virol Sin, 34(1), 1-8 (2019) i)
  5. San LL, Aye KS, Oo NAT, Shwe MM, Fukushima Y, Gordon SV, Suzuki Y, Nakajima C: “Insight into multidrug-resistant Beijing genotype Mycobacterium tuberculosis isolates in Myanmar”, Int J Infect Dis, 76:109-119 (2018)
  6. Ishida Y, Tsuda M, Sawamura Y, Fujii K, Murai H, Horiuchi N, Orba Y, Sawa H, Hall WW, Nagashima K, Tanaka S: “Integrated diagnosis” of pilocytic astrocytoma: Molecular diagnostic procedure for an unusual case”, Pathol Int, 68(12):694-699 (2018) i) ii)
  7. Zhang Z, Dong Z, Wang Q, Carr MJ, Li J, Liu T, Li D, Shi W: “Characterization of an inactivated whole-virus bivalent vaccine that induces balanced protective immunity against coxsackievirus A6 and A10 in mice”, Vaccine, 36(46):7095-7104(2018) i)
  8. Maharjan B, Nakajima C, Isoda N, Thapa J, Poudel A, Shah Y, Yamaguchi T, Shrestha B, Hoffmann H, Avsar K, Shrestha A, Gordon SV, Suzuki Y: “Genetic diversity and distribution dynamics of multidrug-resistant Mycobacterium tuberculosis isolates in Nepal”, Sci Rep, 8(1):16634 (2018) i) ii)
  9. Ernest M, Hunja C, Arakura Y, Haraga Y, Abkallo HM, Zeng W, Jackson DC, Chua B, Culleton R: “The Toll-Like Receptor 2 agonist PEG-Pam2Cys as an immunochemoprophylactic and immunochemotherapeutic against the liver and transmission stages of malaria parasites”, Int J Parasitol Drugs Drug Resist, 8(3):451-458(2018)i)
  10. Wang M, Ren Q, Zhang Z, Zhang L, Carr MJ, Li J, Zhou H, Shi W: “Rapid detection of hand, foot and mouth disease enterovirus genotypes by multiplex PCR”, J Virol Methods, 258:7-12 (2018) i)
  11. Fujiki J, Nobori H, Sato A, Sasaki M, Carr M, Hall WW, Orba Y, Sawa H: “Single amino acid mutation in dengue virus NS4B protein has opposing effects on viral proliferation in mammalian and mosquito cells”, Jpn J Infect Dis, 71(6):448-454 (2018) i)
  12. Sasaki M, Kajihara M, Changula K, Mori-Kajihara A, Ogawa H, Hang’ombe, BM, Mweene AS, Simuunza M, Yoshida R, Carr M, Orba Y, Takada A, Sawa H: “ Identification of group A rotaviruses from Zambian fruit bats provides evidence for long-distance transmission events in Africa”, Infect Genet Evol, 63:104-109 (2018) i)
  13. Nobori H, Toba S, Yoshida R, Hall WW, Orba Y, Sawa H, Sato A: “Identification of Compound-B, a novel anti-dengue virus agent targeting the non-structural protein 4A”, Antiviral Res, 155:60-66 (2018) i)
  14. Schuelein R, Spencer H, Dagley LF, Li PF, Luo L, Stow JL, Abraham G, Naderer T, Gomez-Valero L, Buchrieser C, Sugimoto C, Yamagishi J, Webb AI, Pasricha S, HartlandEL: “Targeting of RNA Polymerase II by a nuclear Legionella pneumophila Dot/Icm effector SnpL”, Cell Microbiol, 20(9):e12852 (2018) i) ii)
  15. Orba Y, Hang’ombe BM, Mweene AS, Wada Y, Anindita PD, Phongphaew W, Qiu Y, Kajihara M, Mori-Kajihara A, Eto Y, Sasaki M, Hall WW, Eshita Y, Sawa H: “First isolation of West Nile virus in Zambia from mosquitoes”, Transbound Emerg Dis, 65(4):933-938 (2018) i)
  16. Torii S, Orba Y, Hang’ombe BM, Mweene AS, Wada Y, Anindita PD, Phongphaew W, Qiu Y, Kajihara M, Mori-Kajihara A, Eto Y, Harima H, Sasaki M, Carr M, Hall WW, Eshita Y, Abe T, Sawa H: “Discovery of Mwinilunga alphavirus: a novel alphavirus in Culex mosquitoes in Zambia”, Virus Res, 250:31-36 (2018) i)
  17. Sasaki M, Anindita PD, Ito N, Sugiyama M, Carr M, Fukuhara H, Ose T, Maenaka K, Takada A, Hall WW, Orba Y, Sawa H: “Role of Heparan sulfate proteoglycans serve as an attachment factor for rabies virus entry and infection”, J Infect Dis, 217(11):1740-1749 (2018) i)

 

1.2) International collaborative papers：21

       i) Papers where “GI-CoRE” is stated as an affiliated institution

      ii) Papers which mention “Hokkaido University” in the acknowledgements.

  1. Bazarragchaa E, Okamatsu M, Ulaankhuu A, Twabela AT, Matsuno K, Kida H, Sakoda Y: “Evaluation of a rapid isothermal nucleic aci  amplification kit, Alere i Influenza A&B, for the detection of avian influenza viruses”, J Virol Methods, 265:121-125(2019) i)
  2. Koide K, Kongsoi S, Ouchi Y, Yamaguchi T, Nakajima C, Suzuki Y: “Antibacterial Activity of DC-159a Against Salmonella Typhimurium”, Microb Drug Resist, 25(1):14-22(2019) i) ii)
  3. Qiu Y, Abe T, Nakao R, Satoh K, Sugimoto C: “Viral population analysis of the taiga tick, Ixodes persulcatus, by using Batch Learning Self-Organizing Maps and BLAST search”, J Vet Med Sci, 81(3):401-410(2019) i)
  4. Torii S, Matsuno K, Qiu Y, Mori-Kajihara A, Kajihara M, Nakao R, Nao N, Okazaki K, Sashika M, Hiono T, Okamatsu M, Sakoda Y, Ebihara H, Takada A, Sawa H: “Infection of newly identified phleboviruses in ticks and wild animals in Hokkaido, Japan indicating tick-borne life cycles”, Ticks Tick Borne Dis, 10(2):328-335(2019) i) ii)
  5. Phetsuksiri B, Rudeeaneksin J, Srisungngam S, Bunchoo S, Klayut W, Sangkitporn S, Nakajima C, Hamada S, Suzuki Y: “Loop-mediated isothermal amplification for rapid identification of Mycobacterium tuberculosis in comparison with immunochromatographic SD Bioline MPT64 Rapid® in a high burden setting” Jpn J Infect Dis. 25:72(2):112-114 (2019) i)
  6. Davaasuren B, Yamagishi J, Mizushima D, Narantsatsral S, Otgonsuren D, Myagmarsuren P, Battsetseg B, Battur B, Inoue N, Suganuma K: “Draft Genome Sequence of Trypanosoma equiperdumStrain IVM-t1”, Microbiol Resour Announc, 8(9) (2019) i)
  7. Thu MJ, Qiu Y, Matsuno K, Kajihara M, Mori-Kajihara A, Omori R, Monma N, Chiba K, Seto J, Gokuden M, Andoh M, Oosako H, Katakura K, Takada A, Sugimoto C, Isoda N, Nakao R: “Diversity of spotted fever group rickettsiae and their association with host ticks in Japan”, Sci Rep, 9(1):1500 (2019) i)
  8. Sato M, Maruyama J, Kondoh T, Nao N, Miyamoto H, Takadate Y, Furuyama W, Kajihara M, Ogawa H, Manzoor R, Yoshida R, Igarashi M, Takada A: “Generation of bat-derived influenza viruses and their reassortants” Sci Rep, 9(1):1158 (2019) i)
  9. HiSivakumar T, Tuvshintulga B, Zhyldyz A, Kothalawala H, Yapa PR, Kanagaratnam R, Vimalakumar SC, Abeysekera TS, Weerasingha AS, Yamagishi J, Igarashi I, Silva SSP, Yokoyama N: “Genetic analysis of Babesiaisolates from cattle with clinical babesiosis in Sri Lanka”, J Clin Microbiol, 48(12):915-924 (2018) i)
  10. Borthong J, Omori R, Sugimoto C, Suthienkul O, Nakao R, Ito K: “Comparison of Database Search Methods for the Detection of Legionella pneumophilain Water Samples Using Metagenomic Analysis”, Front Microbiol, 9:1272 (2018) i)
  11. Thida Oo NA, San LL, Thapa J, Aye KS, Aung WW, Nakajima C, Suzuki Y: “Characterization of mutations conferring streptomycin resistance to multidrug-resistant Mycobacterium tuberculosis isolates from Myanmar”, Tuberculosis, 111:8-13 (2018) i) ii)
  12. Wang ZJ, Kikutani Y, Nguyen LT, Hiono T, Matsuno K, Okamatsu M, Krauss S, Webby R, Lee YJ, Kida H, Sakoda Y: “H13 influenza viruses in wild birds have undergone genetic and antigenic diversification in nature”, Virus Genes, 54(4):543-549 (2018) i) ii)
  13. Imai K, Tarumoto N, Runtuwene LR, Sakai J, Hayashida K, Eshita Y, Maeda R, Tuda J, Ohno H, Murakami T, Maesaki S, Suzuki Y, Yamagishi J, Maeda T: “An innovative diagnostic technology for the codon mutation C580Y in kelch13 of Plasmodium falciparum with MinION nanopore sequencer”, Malar J, 17(1), 217 (2018) i)
  14. Runtuwene LR, Tuda JSB, Mongan AE, Makalowski W, Frith MC, Imwong M, Srisutham S, Nguyen Thi LA, Tuan NN, Eshita Y, Maeda R, Yamagishi J, Suzuki Y: “Nanopore sequencing of drug-resistance-associated genes in malaria parasites, Plasmodium falciparum.”, Sci Rep, 8(1), 8286 (2018) i)
  15. Marzi A, Haddock E, Kajihara M, Feldmann H, Takada A: “Monoclonal Antibody Cocktail Protects Hamsters From Lethal Marburg Virus Infection”, J Infect Dis, 218(suppl_5): S662-S665 (2018) i)
  16. Changula K, Kajihara M, Mori-Kajihara A, Eto Y, Miyamoto H, Yoshida R, Shigeno A, Hang’ombe B, Qiu Y, Mwizabi D, Squarre D, Ndebe J, Ogawa H, Harima H, Simulundu E, Moonga L, Kapila P, Furuyama W, Kondoh T, Sato M, Takadate Y, Kaneko C, Nakao R, Mukonka V, Mweene A, Takada A:”Seroprevalence of Filovirus Infection of Rousettus aegyptiacus Bats in Zambia., J Infect Dis,218(suppl_5):S312-S317 (2018) i) ii)
  17. Kondoh T, Letko M, Munster VJ, Manzoor R, Maruyama J, Furuyama W, Miyamoto H, Shigeno A, Fujikura D, Takadate Y, Yoshida R, Igarashi M, Feldmann H, Marzi A, Takada A: “Single-Nucleotide Polymorphisms in Human NPC1 Influence Filovirus Entry Into Cells”, J Infect Dis, 218(suppl_5):S397-S402 (2018) i) ii)
  18. Matsuno K, Kajihara M, Nakao R, Nao N, Mori-Kajihara A, Muramatsu M, Qin Y, Torii S, Igarashi M, Kasajima N, Mizume K, Yoshii K, Sawa H, Sugimoto C, Takada A, Ebihara H: “ The unique phylogenetic position of a novel tick-borne phlebovirus ensures an ixodid origin of the genus Phlebovirus”, Sphere, 3(3). pii: e00239-18 (2018) i) ii)
  19. Qiu Y, Kaneko C, Kajihara M, Ngonda S, Simulundu E, Muleya W, Thu MJ, Hang’ombe MB, Katakura K, Takada A, Sawa H, Simuunza M, Nakao R: “Tick-borne haemoparasites and Anaplasmataceae in domestic dogs in Zambia”, Ticks Tick Borne Dis, 9(4),988-995(2018) i)　
  20. Fujihira H, Usami K, Matsuno K, Takeuchi H, Denda-Nagai K, Furukawa J, Shinohara Y, Takada A, Kawaoka Y, Irimura T: “A Critical Domain of Ebolavirus Envelope Glycoprotein Determines Glycoform and Infectivity”, Sci Rep 8, 5495(2018) i)
  21. Saasa N, Kajihara M, Dautu G, Mori-Kajihara A, Fukushi S, Sinkala Y, Morikawa S, Mweene A, Takada A, Yoshimatsu K, Arikawa J: “Expression of a recombinant nucleocapsid protein of Rift Valley 1 fever virus in Vero cells as an immunofluorescence antigen and its use for sero-surveillance in traditional cattle herds in Zambia”, Vector Borne Zoonotic Dis, 18(5):273-277 (2018) i)

 

2) Other original papers：21

       i) Papers where “GI-CoRE” is stated as an affiliated institution

      ii) Papers which mention “Hokkaido University” in the acknowledgements.

  1. Shibata A, Harada R, Okamatsu M, Matsuno K, Arita T, Suzuki Y, Shirakura M, Odagiri T, Takemae N, Uchida Y, Saito T, Sakoda Y, Osaka H: “Characterization of a novel reassortant H7N3 highly pathogenic avian influenza virus isolated from a poultry meat product taken on a passenger flight to Japan”, J Vet Med Sci, 81(3):444-448(2019) i)
  2. Sun L, Kono N, Toh H, Xue H, Sano K, Suzuki T, Ainai A, Orba Y, Yamagishi J, Hasegawa H, Takahashi Y, Itamura S, Ohnishi K: “Identification of Mouse and Human Antibody Repertoires by Next-Generation Sequencing”,J Vis Exp, (145)(2019) i)ii)
  3. Fujisawa S, Konnai S, Okagawa T, Maekawa N, Tanaka A, Suzuki Y, Murata S, Ohashi K: “Effects of bovine tumor necrosis factor alpha decoy receptors on cell death and inflammatory cytokine kinetics: potential for bovine inflammation therapy.”, BMC Vet Res, 15(1):68 (2019) i)
  4. Taniguchi K, Ando Y, Nobori H, Toba S, Noshi T, Kobayashi M, Kawai M, Yoshida R, Sato A, Shishido T, Naito A, Matsuno K, Okamatsu M, Sakoda Y, Kida H: “Inhibition of avian-origin influenza A(H7N9) virus by the novel cap-dependent endonuclease inhibitor baloxavir marboxil”, Sci Rep, 9(1):3466 (2019) i) ii)
  5. Takehana K, Kinjyo T, Nemoto M, Matsuno K: “Rapid and sensitive detection of elephant endotheliotropic herpesvirus 1 (EEHV1) in blood by loop-mediated isothermal amplification (LAMP)”, J Vet Med Sci, 81 (3), 504-507 (2019) i)
  6. Kobayashi A, Qi Z, Shimazaki T, Munesue Y, Miyamoto T, Isoda N, Sawa H, Aoshima K, Kimura T, Mohri S, Kitamoto T, Yamashita T, Miyoshi I: “Ganglioside synthase knock-out reduces prion disease incubation time in mouse models”, Am J Pathol,189(3), 677-686 (2019) i) ii)
  7. Shibata A, Hiono T, Fukuhara H, Sumiyoshi R, Ohkawara A, Matsuno K, Okamatsu M, Osaka H, Sakoda Y: “Isolation and characterization of avian influenza viruses from raw poultry products illegally imported to Japan by international flight passengers”, Transbound Emerg Dis, 65 (2), 465-475 (2018) i)
  8. Tazaki T, Tabata K, Ainai A, Ohara Y, Kobayashi S, Ninomiya T, Orba Y, Mitomo H, Nakano T, Hasegawa H, Ijiro K, Sawa H, Suzuki T, Niikura K: “Shape-dependent adjuvanticity of nanoparticle-conjugated RNA adjuvants for intaranasal inactivatd influenza vaccines”, RSC Advances, 8:16527-16536 (2018) i)
  9. Hayashida K, Umemiya-Shirafuji R, Sivakumar T, Yamagishi J, Suzuki Y, Sugimoto C, Yokoyama N:” Establishment of a mouse-tick infection model for Theileria orientalis and analysis of its transcriptome”, Int J Parasitol, 48(12):915-924 (2018) i) ii)
  10. Noshi T, Kitano M, Taniguchi K, Yamamoto A, Omoto S, Baba K, Hashimoto T, Ishida K, Kushima Y, Hattori K, Kawai M, Yoshida R, Kobayashi M, Yoshinaga T, Sato A, Okamatsu M, Sakoda Y, Kida H, Shishido T, Naito A: “In vitro characterization of baloxavir acid, a first-in-class cap-dependent endonuclease inhibitor of the influenza virus polymerase PA subunit”, Antiviral Res, 160:109-117 (2018) i)
  11. Okamoto M, Fukushima Y, Kouwaki T, Daito T, Kohara M, Kida H, Oshiumi H: “MicroRNA-451a in extracellular, blood-resident vesicles attenuates macrophage and dendritic cell responses to influenza whole-virus vaccine”, J Biol Chem, 293(48):18585-18600 (2018) i) ii)
  12. Anindita PD, Sasaki M, Okada K, Ito N, Sugiyama M, Saito-Tarashima N, Minakawa N, Shuto S, Otsuguro S, Ichikawa S, Matsuda A, Maenaka K, Orba Y, Sawa H: “Ribavirin-related compounds exert in vitro inhibitory effects toward rabies virus”, Antiviral Res, 154:1-9 (2018) i)
  13. Ohkoshi Y, Sato T, Wada T, Fukushima Y, Murabayashi H, Takakuwa Y, Nishiyama K, Honda H, Shiraishi T, Kuronuma K, Takahashi H, Nakajima C, Suzuki Y, Yokota SI:“Whole genome analysis of a multidrug-resistant Streptococcus pneumoniae isolate from a patient with invasive pneumococcal infection developing disseminated intravascular coagulation”, J Infect Chemother, 24(8):674-681 (2018) i)
  14. Yoshida S, Araki T, Asai T, Tsuyuguchi K, Arikawa K, Iwamoto T, Nakajima C, Suzuki Y, Ohya K, Yanai T, Wada T, Yamamoto T: “Phylogenetic uniqueness of Mycobacterium avium subspecies hominissuis isolated from an abnormal pulmonary bovine case”, Infect Genet Evol, 62:122-129 (2018) i) ii)
  15. Yamasaki T, Suzuki A, Hasebe R, Horiuchi M: “ Retrograde Transport by Clathrin-Coated Vesicles is Involved in Intracellular Transport of PrPScin Persistently Prion-Infected Cells”, Sci Rep, 8(1):12241(2018) i)
  16. Shibata A, Okamatsu M, Sumiyoshi R, Matsuno K, Wang ZJ, Kida H, Osaka H, Sakoda Y: “Repeated detection of H7N9 avian influenza viruses in raw poultry meat illegally brought to Japan by international flight passengers”, Virology, 524:10-17 (2018) i)
  17. Sajiki Y, Konnai S, Okagawa T, Nishimori A, Maekawa N, Goto S, Ikebuchi R, Nagata R, Kawaji S, Kagawa Y, Yamada S, Kato Y, Nakajima C, Suzuki Y, Murata S, Mori Y, Ohashi K: “Prostaglandin E2Induction Suppresses the Th1 Immune Responses in Cattle with Johne’s Disease”, Infect Immun, 86(5) (2018) i) ii)
  18. Liu M, Adjou Moumouni PF, Asada M, Hakimi H, Masatani T, Vudriko P, Lee SH, Kawazu SI, Yamagishi J, Xuan X: “Establishment of a stable transfection system for genetic manipulation of Babesia gibsoni”, Parasit Vectors, 11(1):260 (2018) i)
  19. Okagawa T, Konnai S, Nishimori A, Maekawa N, Goto S, Ikebuchi R, Kohara J, Suzuki Y, Yamada S, Kato Y, Murata S, Ohashi K: “Cooperation of PD-1 and LAG-3 in the exhaustion of CD4+and CD8+ T cells during bovine leukemia virus infection”, Vet Res, 49(1),50(2018) i)
  20. Honda H, Sato T, Shinagawa M, Fukushima Y, Nakajima C, Suzuki Y, Shiraishi T, Kuronuma K, Takahashi S, Takahashi H, Yokota SI: “Multiclonal expansion and high prevalence of β-lactamase-negative high-level ampicillin-resistant Haemophilus influenzaein Japan, and susceptibility to quinolones”, Antimicrob Agents Chemother, 62(9) (2018) i) ii)
  21. Moriyama M, Igarashi M, Koshiba T, Irie T, Takada A, Ichinohe T: “Two conserved amino acids within the NSs of SFTS phlebovirus are essential for anti-interferon activity”, J Virol, 92(19) (2018) i)