Publications　FY2021

Menu

Publications

FY 2021

1) International collaborative papers (peer reviewed)

1.1) International collaborative papers co-authored with overseas affiliated universities：26

  1. Itakura Y, Tabata K, Morimoto K, Ito N, Chambaro HM, Eguchi R, Otsuguro KI, Hall WW, Orba Y, Sawa H, Sasaki M: “Glu 333 in rabies virus glycoprotein is involved in virus attenuation through astrocyte infection and interferon responses”, iScience, 25(4):104122(2022)
  2. Ramaprasad A, Klaus S, Douvropoulou O, Culleton R, Pain A: “Plasmodium vinckei genomes provide insights into the pan-genome and evolution of rodent malaria parasites”, BMC Biol, 19(1):69(2021)
  3. Nguyen THO, Rowntree LC, Petersen J, Chua BY, Hensen L, Kedzierski L, van de Sandt CE, Chaurasia P, Tan HX, Habel JR, Zhang W, Allen LF, Earnest L, Mak KY, Juno JA, Wragg K, Mordant FL, Amanat F, Krammer F, Mifsud NA, Doolan DL, Flanagan KL, Sonda S, Kaur J, Wakim LM, Westall GP, James F, Mouhtouris E, Gordon CL, Holmes NE, Smibert OC, Trubiano JA, Cheng AC, Harcourt P, Clifton P, Crawford JC, Thomas PG, Wheatley AK, Kent SJ, Rossjohn J, Torresi J, Kedzierska K: “CD8 + T cells specific for an immunodominant SARS-CoV-2 nucleocapsid epitope display high naive precursor frequency and TCR promiscuity”, Immunity, 54(5):1066-1082.e1065(2021)
  4. Guan Q, Garbati M, Mfarrej S, AlMutairi T, Laval T, Singh A, Fagbo S, Smyth A, Browne JA, urRahman MA, Alruwaili A, Hoosen A, Meehan CJ, Nakajima C, Suzuki Y, Demangel C, Bhatt A, Gordon SV, AlAsmari F, Pain A: “Insights into the ancestry evolution of the Mycobacterium tuberculosis complex from analysis of Mycobacterium riyadhense”, NAR Genom Bioinform, 3(3):lqab070(2021)
  5. de Lourdes do Carmo Guimarães Diniz J, von Groll A, Unis G, Dalla-Costa ER, Rosa Rossetti ML, Vianna JS, Ramos DF, Reis AJ, Bartolomeu Halicki PC, Rheingantz Scaini JL, Castillos de Ibrahim das Neves Y, Phelan J, Gomes AR, Campino S, Machado KDS, Werhli AV, Pain A, Clark TG, Perdigão J, Viveiros M, Portugal I, Almeida Silva PE: “Whole-genome sequencing as a tool for studying the microevolution of drug-resistant serial Mycobacterium tuberculosis isolates”, Tuberculosis (Edinb), 131:102137(2021)
  6. Koutsakos M, Kedzierska K, Nguyen THO: “Evaluation of Human Circulating T Follicular Helper Cells in Influenza- and SARS-CoV-2-Specific B Cell Immunity”, Methods Mol Biol, 2380:201-209(2022)
  7. Mourier T, Shuaib M, Hala S, Mfarrej S, Alofi F, Naeem R, Alsomali A, Jorgensen D, Subudhi AK, Ben Rached F, Guan Q, Salunke RP, Ooi A, Esau L, Douvropoulou O, Nugmanova R, Perumal S, Zhang H, Rajan I, Al-Omari A, Salih S, Shamsan A, Al Mutair A, Taha J, Alahmadi A, Khotani N, Alhamss A, Mahmoud A, Alquthami K, Dageeg A, Khogeer A, Hashem AM, Moraga P, Volz E, Almontashiri N, Pain A: “SARS-CoV-2 genomes from Saudi Arabia implicate nucleocapsid mutations in host response and increased viral load”, Nat Commun, 13(1):601(2022)
  8. Runtuwene LR, Sathirapongsasuti N, Srisawat R, Komalamisra N, Tuda JSB, Mongan AE, Aboge GO, Shabardina V, Makalowski W, Nesti DR, Artama WT, Nguyen-Thi LA, Wan KL, Na BK, Hall W, Pain A, Eshita Y, Maeda R, Yamagishi J, Suzuki Y: “Global research alliance in infectious disease: a collaborative effort to combat infectious diseases through dissemination of portable sequencing”, BMC Res Notes, 15(1):44(2022)
  9. Akapelwa ML, Kapalamula TF, Ouchi-Aizu Y, Hang’ombe BM, Nishiuchi Y, Gordon SV, Solo ES, Tamaru A, Nishimura T, Hasegawa N, Morimoto K, Fukushima Y, Suzuki Y, Nakajima C: “Evaluation of IS1245 LAMP in Mycobacterium avium and the influence of host-related genetic diversity on its application”, Diagn Microbiol Infect Dis, 101(4):115494(2021)
  10. Chambaro HM, Sasaki M, Muleya W, Kajihara M, Shawa M, Mwape KE, Harima H, Qiu Y, Hall WW, Fandamu P, Squarre D, Simulundu E, Sawa H, Orba Y: “Hepatitis E virus infection in pigs: a first report from Zambia”, Emerg Microbes Infect, 10(1):2169-2172(2021)
  11. Farr RJ, Rootes CL, Rowntree LC, Nguyen THO, Hensen L, Kedzierski L, Cheng AC, Kedzierska K, Au GG, Marsh GA, Vasan SS, Foo CH, Cowled C, Stewart CR: “Altered microRNA expression in COVID-19 patients enables identification of SARS-CoV-2 infection”, PLoS Pathog, 17(7):e1009759(2021)
  12. Funk T, Pharris A, Spiteri G, Bundle N, Melidou A, Carr M, Gonzalez G, Garcia-Leon A, Crispie F, O’Connor L, Murphy N, Mossong J, Vergison A, Wienecke-Baldacchino AK, Abdelrahman T, Riccardo F, Stefanelli P, Di Martino A, Bella A, Lo Presti A, Casaca P, Moreno J, Borges V, Isidro J, Ferreira R, Gomes JP, Dotsenko L, Suija H, Epstein J, Sadikova O, Sepp H, Ikonen N, Savolainen-Kopra C, Blomqvist S, Möttönen T, Helve O, Gomes-Dias J, Adlhoch C, groups Cs: “Characteristics of SARS-CoV-2 variants of concern B.1.1.7, B.1.351 or P.1: data from seven EU/EEA countries, weeks 38/2020 to 10/2021”, Euro Surveill, 26(16)(2021)
  13. Guan Q, Alhuthali B, Mfarrej S, Halim MA, Almaghrabi RS, Pain A: “Metagenomics-driven rapid diagnosis of an imported fatal case of rare amoebic meningoencephalitis”, J Travel Med, (2021)
  14. Hare D, Gonzalez G, Dean J, McDonnell K, Carr MJ, De Gascun CF: “Genomic epidemiological analysis of SARS-CoV-2 household transmission”, Access Microbiol, 3(7):000252(2021)
  15. Holohan C, Hanrahan S, Feely N, Li P, O’Connell J, Moss C, Carr M, Tagit O, Lee GU: “Influence of viral transport media and freeze-thaw cycling on the sensitivity of qRT-PCR detection of SARS-CoV-2 nucleic acids”, Nanoscale, 13(37):15659-15667(2021)
  16. Kapalamula TF, Chizimu J, Belotindos L, Akapelwa M, Shrestha D, Nyenje ME, Munyeme M, Hang’ombe BM, Mkakosya RS, Gordon SV, Nakajima C, Suzuki Y: “Molecular epidemiology of Mycobacterium bovis in central parts of Malawi”, Transbound Emerg Dis, (2021)
  17. Mourier T, de Alvarenga DAM, Kaushik A, de Pina-Costa A, Douvropoulou O, Guan Q, Guzmán-Vega FJ, Forrester S, de Abreu FVS, Júnior CB, de Souza Junior JC, Moreira SB, Hirano ZMB, Pissinatti A, Ferreira-da-Cruz MF, de Oliveira RL, Arold ST, Jeffares DC, Brasil P, de Brito CFA, Culleton R, Daniel-Ribeiro CT, Pain A: “The genome of the zoonotic malaria parasite Plasmodium simium reveals adaptations to host switching”, BMC Biol, 19(1):219(2021)
  18. Otto WR, Lamson DM, Gonzalez G, Weinberg GA, Pecora ND, Fisher BT, St George K, Kajon AE: “Fatal Neonatal Sepsis Associated with Human Adenovirus Type 56 Infection: Genomic Analysis of Three Recent Cases Detected in the United States”, Viruses, 13(6)(2021)
  19. Reteng P, Nguyen Thuy L, Tran Thi Minh T, Mares-Guia MAMM, Torres MC, de Filippis AMB, Orba Y, Kobayashi S, Hayashida K, Sawa H, Hall WW, Nguyen Thi LA, Yamagishi J: “A targeted approach with nanopore sequencing for the universal detection and identification of flaviviruses”, Sci Rep, 11(1):19031(2021)
  20. Sasaki M, Kishimoto M, Itakura Y, Tabata K, Intaruck K, Uemura K, Toba S, Sanaki T, Sato A, Hall WW, Orba Y, Sawa H: “Air-liquid interphase culture confers SARS-CoV-2 susceptibility to A549 alveolar epithelial cells”, Biochem Biophys Res Commun, 577:146-151(2021)
  21. Sasaki M, Toba S, Itakura Y, Chambaro HM, Kishimoto M, Tabata K, Intaruck K, Uemura K, Sanaki T, Sato A, Hall WW, Orba Y, Sawa H: “SARS-CoV-2 Bearing a Mutation at the S1/S2 Cleavage Site Exhibits Attenuated Virulence and Confers Protective Immunity”, mBio, 12(4):e0141521(2021)
  22. Sekiya T, Ohno M, Nomura N, Handabile C, Shingai M, Jackson DC, Brown LE, Kida H: “Selecting and Using the Appropriate Influenza Vaccine for Each Individual”, Viruses, 13(6)(2021)
  23. Shingai M, Nomura N, Sekiya T, Ohno M, Fujikura D, Handabile C, Omori R, Ohara Y, Nishimura T, Endo M, Kimachi K, Mitsumata R, Ikeda T, Kitayama H, Hatanaka H, Sobue T, Muro F, Suzuki S, Thanh Nguyen C, Ishigaki H, Nakayama M, Mori Y, Itoh Y, Koutsakos M, Chua BY, Kedzierska K, Brown LE, Jackson DC, Ogasawara K, Kino Y, Kida H: “Potent priming by inactivated whole influenza virus particle vaccines is linked to viral RNA uptake into antigen presenting cells”, Vaccine, 39(29):3940-3951(2021)
  24. Trifkovic S, Gilbertson B, Fairmaid E, Cobbin J, Rockman S, Brown LE: “Gene Segment Interactions Can Drive the Emergence of Dominant Yet Suboptimal Gene Constellations During Influenza Virus Reassortment”, Front Microbiol, 12:683152(2021)
  25. Uemura K, Nobori H, Sato A, Sanaki T, Toba S, Sasaki M, Murai A, Saito-Tarashima N, Minakawa N, Orba Y, Kariwa H, Hall WW, Sawa H, Matsuda A, Maenaka K: “5-Hydroxymethyltubercidin exhibits potent antiviral activity against flaviviruses and coronaviruses, including SARS-CoV-2”, iScience, 24(10):103120(2021)
  26. Zeeshan M, Pandey R, Subudhi AK, Ferguson DJP, Kaur G, Rashpa R, Nugmanova R, Brady D, Bottrill AR, Vaughan S, Brochet M, Bollen M, Pain A, Holder AA, Guttery DS, Tewari R: “Protein phosphatase 1 regulates atypical mitotic and meiotic division in Plasmodium sexual stages”, Commun Biol, 4(1):760(2021)

 

1.2) International collaborative papers：39

  1. Yanagihara Y, Villanueva SYAM, Nomura N, Ohno M, Sekiya T, Handabile C, Shingai M, Higashi H, Yoshida SI, Masuzawa T, Gloriani NG, Saito M, Kida H: “Is an Environmental Bacterium That Grows in Waterlogged Soil”, Microbiol Spectr: e0215721(2022)
  2. Sugi T, Tomita T, Kidaka T, Kawai N, Hayashida K, Weiss LM, Yamagishi J: “Single Cell Transcriptomes of In Vitro Bradyzoite Infected Cells Reveals Toxoplasma gondii Stage Dependent Host Cell Alterations”, Front Cell Infect Microbiol, 12:848693(2022)
  3. Okuya K, Hattori T, Saito T, Takadate Y, Sasaki M, Furuyama W, Marzi A, Ohiro Y, Konno S, Takada A: “Multiple Routes of Antibody-Dependent Enhancement of SARS-CoV-2 Infection”, Microbiol Spectr: e0155321(2022)
  4. Lombe BP, Saito T, Miyamoto H, Mori-Kajihara A, Kajihara M, Saijo M, Masumu J, Hattori T, Igarashi M, Takada A: “Mapping of Antibody Epitopes on the Crimean-Congo Hemorrhagic Fever Virus Nucleoprotein”, Viruses, 14(3)(2022)
  5. Bwalya P, Solo ES, Chizimu JY, Shrestha D, Mbulo G, Thapa J, Nakajima C, Suzuki Y: “Characterization of embB mutations involved in ethambutol resistance in multi-drug resistant Mycobacterium tuberculosis isolates in Zambia”, Tuberculosis (Edinb), 133:102184(2022)
  6. Chizimu JY, Solo ES, Bwalya P, Kapalamula TF, Akapelwa ML, Lungu P, Shrestha D, Fukushima Y, Mukonka V, Thapa J, Nakajima C, Suzuki Y: “Genetic Diversity and Transmission of Multidrug-Resistant Mycobacterium tuberculosis strains in Lusaka, Zambia”, Int J Infect Dis, 114:142-150(2022)
  7. Kidaka T, Sugi T, Hayashida K, Suzuki Y, Xuan X, Dubey JP, Yamagishi J: “TSS-seq of Toxoplasma gondii sporozoites revealed a novel motif in stage-specific promoters”, Infect Genet Evol, 98:105213(2022)
  8. Mubemba B, Mburu MM, Changula K, Muleya W, Moonga LC, Chambaro HM, Kajihara M, Qiu Y, Orba Y, Hayashida K, Sutcliffe CG, Norris DE, Thuma PE, Ndubani P, Chitanga S, Sawa H, Takada A, Simulundu E: “Current knowledge of vector-borne zoonotic pathogens in Zambia: A clarion call to scaling-up “One Health” research in the wake of emerging and re-emerging infectious diseases”, PLoS Negl Trop Dis, 16(2):e0010193(2022)
  9. Spruit CM, Zhu X, Tomris I, Carrasco MR, Han AX, Broszeit F, van der Woude R, Bouwman KM, Luu MMT, Matsuno K, Sakoda Y, Russell CA, Wilson IA, Boons GJ, de Vries RP: “N-glycolylneuraminic acid binding of avian and equine H7 influenza A viruses”, J Virol:jvi0212021(2022)
  10. Belotindos L, Villanueva M, Miguel J, Bwalya P, Harada T, Kawahara R, Nakajima C, Mingala C, Suzuki Y: “Prevalence and Characterization of Quinolone-Resistance Determinants in Escherichia coli Isolated from Food-Producing Animals and Animal-Derived Food in the Philippines”, Antibiotics (Basel), 10(4)(2021)
  11. Bwalya P, Yamaguchi T, Solo ES, Chizimu JY, Mbulo G, Nakajima C, Suzuki Y: “Characterization of Mutations Associated with Streptomycin Resistance in Multidrug-Resistant”, Antibiotics (Basel), 10(10)(2021)
  12. Changula K, Simulundu E, Lombe BP, Nakayama E, Miyamoto H, Takahashi Y, Sawa H, Simukonda C, Hang’ombe BM, Takada A: “Serological Evidence of Filovirus Infection in Nonhuman Primates in Zambia”, Viruses, 13(7)(2021)
  13. Chitanga S, Chambaro HM, Moonga LC, Hayashida K, Yamagishi J, Muleya W, Changula K, Mubemba B, Simbotwe M, Squarre D, Fandamu P, Nalubamba KS, Qiu Y, Hirofumi S, Simulundu E: “Rickettsia lusitaniae in Ornithodoros Porcinus Ticks, Zambia”, Pathogens, 10(10)(2021)
  14. Chizimu JY, Solo ES, Bwalya P, Tanomsridachchai W, Chambaro H, Shawa M, Kapalamula TF, Lungu P, Fukushima Y, Mukonka V, Thapa J, Nakajima C, Suzuki Y: “Whole-Genome Sequencing Reveals Recent Transmission of Multidrug-Resistant”, Antibiotics (Basel), 11(1)(2021)
  15. Chonsin K, Changkwanyeun R, Siriphap A, Intarapuk A, Prapasawat W, Changkaew K, Pulsrikan C, Isoda N, Nakajima C, Suzuki Y, Suthienkul O: “Prevalence and Multidrug-Resistance Salmonella in Swine Production Chain in a Central Province, Thailand”, J Food Prot, (2021)
  16. Harima H, Okuya K, Kajihara M, Ogawa H, Simulundu E, Bwalya E, Qiu Y, Mori-Kajihara A, Munyeme M, Sakoda Y, Saito T, Hang’ombe BM, Sawa H, Mweene AS, Takada A: “Serological and molecular epidemiological study on swine influenza in Zambia”, Transbound Emerg Dis, (2021)
  17. Harima H, Sasaki M, Orba Y, Okuya K, Qiu Y, Wastika CE, Changula K, Kajihara M, Simulundu E, Yamaguchi T, Eto Y, Mori-Kajihara A, Sato A, Taniguchi S, Takada A, Saijo M, Hang’ombe BM, Sawa H: “Attenuated infection by a Pteropine orthoreovirus isolated from an Egyptian fruit bat in Zambia”, PLoS Negl Trop Dis, 15(9):e0009768(2021)
  18. Ilinov A, Nishiyama A, Namba H, Fukushima Y, Takihara H, Nakajima C, Savitskaya A, Gebretsadik G, Hakamata M, Ozeki Y, Tateishi Y, Okuda S, Suzuki Y, Vinnik YS, Matsumoto S: “Extracellular DNA of slow growers of mycobacteria and its contribution to biofilm formation and drug tolerance”, Sci Rep, 11(1):10953(2021)
  19. Kalonda A, Phonera M, Saasa N, Kajihara M, Sutcliffe CG, Sawa H, Takada A, Simulundu E: “Influenza A and D Viruses in Non-Human Mammalian Hosts in Africa: A Systematic Review and Meta-Analysis”, Viruses, 13(12)(2021)
  20. Kodama F, Yamaguchi H, Park E, Tatemoto K, Sashika M, Nakao R, Terauchi Y, Mizuma K, Orba Y, Kariwa H, Hagiwara K, Okazaki K, Goto A, Komagome R, Miyoshi M, Ito T, Yamano K, Yoshii K, Funaki C, Ishizuka M, Shigeno A, Itakura Y, Bell-Sakyi L, Edagawa S, Nagasaka A, Sakoda Y, Sawa H, Maeda K, Saijo M, Matsuno K: “A novel nairovirus associated with acute febrile illness in Hokkaido, Japan”, Nat Commun, 12(1):5539(2021)
  21. Koide K, San LL, Pachanon R, Park JH, Ouchi Y, Kongsoi S, Utrarachkij F, Nakajima C, Suzuki Y: “Amino Acid Substitution Ser83Ile in GyrA of DNA Gyrases Confers High-Level Quinolone Resistance to Nontyphoidal”, Microb Drug Resist, (2021)
  22. Le KT, Stevenson MA, Isoda N, Nguyen LT, Chu DH, Nguyen TN, Nguyen LV, Tien TN, Le TT, Matsuno K, Okamatsu M, Sakoda Y: “A systematic approach to illuminate a new hot spot of avian influenza virus circulation in South Vietnam, 2016-2017”, Transbound Emerg Dis, (2021)
  23. Maeda K, Sadoughi S, Morimoto A, Uchida K, Chambers JK, Sanjoba C, Yamagishi J, Goto Y: “Hepatomegaly Associated with Non-Obstructive Sinusoidal Dilation in Experimental Visceral Leishmaniasis”, Pathogens, 10(11)(2021)
  24. Mohamed WMA, Moustafa MAM, Kelava S, Barker D, Matsuno K, Nonaka N, Shao R, Mans BJ, Barker SC, Nakao R: “Reconstruction of mitochondrial genomes from raw sequencing data provides insights on the phylogeny of Ixodes ticks and cautions for species misidentification”, Ticks Tick Borne Dis, 13(1):101832(2021)
  25. Ogata S, Pereira JAC, Jhonny LVA, Carolina HPG, Matsuno K, Orba Y, Sawa H, Kawamori F, Nonaka N, Nakao R: “Molecular Survey of Babesia and Anaplasma infection in cattle in Bolivia”, Vet Sci, 8(9)(2021)
  26. Pachanon R, Koide K, Kongsoi S, Ajima N, Kapalamula TF, Nakajima C, Suthienkul O, Suzuki Y: “Effectiveness of Fluoroquinolones with Difluoropyridine Derivatives as R1 Groups on the Salmonella DNA Gyrase in the Presence and Absence of Plasmid-Encoded Quinolone Resistance Protein QnrB19″, Microb Drug Resist, (2021)
  27. Park JH, Yamaguchi T, Ouchi Y, Koide K, Pachanon R, Chizimu JY, Mori S, Kim H, Mukai T, Nakajima C, Suzuki Y: “Interaction of Quinolones Carrying New R1 Group with Mycobacterium leprae DNA Gyrase”, Microb Drug Resist, (2021)
  28. Paudel S, Brenner EP, Hadi SA, Suzuki Y, Nakajima C, Tsubota T, Gairhe KP, Maharjan B, Sreevatsan S: “Genome Sequences of Two Mycobacterium tuberculosis Isolates from Asian Elephants in Nepal”, Microbiol Resour Announc, 10(36):e0061421(2021)
  29. Phonera MC, Simuunza MC, Kainga H, Ndebe J, Chembensofu M, Chatanga E, Kanyanda S, Changula K, Muleya W, Mubemba B, Chitanga S, Kajihara M, Sawa H, Njunga G, Takada A, Simulundu E: “Seroprevalence and Risk Factors of Crimean-Congo Hemorrhagic Fever in Cattle of Smallholder Farmers in Central Malawi”, Pathogens, 10(12)(2021)
  30. Qiu Y, Simuunza M, Kajihara M, Chambaro H, Harima H, Eto Y, Simulundu E, Squarre D, Torii S, Takada A, Hang’ombe BM, Sawa H, Sugimoto C, Nakao R: “Screening of tick-borne pathogens in argasid ticks in Zambia: Expansion of the geographic distribution of Rickettsia lusitaniae and Rickettsia hoogstraalii and detection of putative novel Anaplasma species”, Ticks Tick Borne Dis, 12(4):101720(2021)
  31. Qiu Y, Squarre D, Nakamura Y, Lau ACC, Moonga LC, Kawai N, Ohnuma A, Hayashida K, Nakao R, Yamagishi J, Sawa H, Namangala B, Kawabata H: “Evidence of Borrelia theileri in wild and domestic animals in the Kafue ecosystem of Zambia”, Microorganisms, 9(11)(2021)
  32. Rahman M, Rahim R, Hasan A, Kawai N, Moonga LC, Sugi T, Hayashida K, Yamagishi J: “SARS-CoV-2 Genome Sequences, Including One with an ORF7a Deletion, Obtained from Patients in Bangladesh”, Microbiol Resour Announc, 10(49):e0076421(2021)
  33. Rini EP, Sasaki M, Astuti D, Juniantito V, Teguh Wibawan IW, Sawa H, Setiyono A: “First Molecular Detection of Coxiella burnetii in Beef Cattle in West Java, Indonesia”, Jpn J Infect Dis, (2021)
  34. Rudeeaneksin J, Phetsuksiri B, Nakajima C, Bunchoo S, Suthum K, Tipkrua N, Fukushima Y, Suzuki Y: “Drug-resistant Mycobacterium tuberculosis and its genotypes isolated from an outbreak in western Thailand”, Trans R Soc Trop Med Hyg, 115(8):886-895(2021)
  35. Tateishi Y, Ozeki Y, Nishiyama A, Miki M, Maekura R, Fukushima Y, Nakajima C, Suzuki Y, Matsumoto S: “Comparative genomic analysis of Mycobacterium intracellulare: implications for clinical taxonomic classification in pulmonary Mycobacterium avium-intracellulare complex disease”, BMC Microbiol, 21(1):103(2021)
  36. Taya Y, Kinoshita G, Mohamed WMA, Moustafa MAM, Ogata S, Chatanga E, Ohari Y, Kusakisako K, Matsuno K, Nonaka N, Nakao R: “Applications of Blocker Nucleic Acids and Non-Metazoan PCR Improves the Discovery of the Eukaryotic Microbiome in Ticks”, Microorganisms, 9(5)(2021)
  37. Thapa J, Mikota SK, Gairhe KP, Paudel S, Singh DK, Dhakal IP, Nakajima C, Suzuki Y: “Tuberculosis seroprevalence and comparison of hematology and biochemistry parameters between seropositive and seronegative captive Asian elephants of Nepal”, J Vet Med Sci, 83(8):1278-1283(2021)
  38. Tsunoda R, Usui M, Tagaki C, Fukuda A, Boonla C, Anomasiri W, Sukpanyatham N, Akapelwa ML, Nakajima C, Tamura Y, Suzuki Y: “Genetic characterization of coliform bacterial isolates from environmental water in Thailand”, J Infect Chemother, 27(5):722-728(2021)
  39. Yoo JS, Sasaki M, Cho SX, Kasuga Y, Zhu B, Ouda R, Orba Y, de Figueiredo P, Sawa H, Kobayashi KS: “SARS-CoV-2 inhibits induction of the MHC class I pathway by targeting the STAT1-IRF1-NLRC5 axis”, Nat Commun, 12(1):6602(2021)

 

2) Other original papers：32

  1. Nakamura T, Isoda N, Sakoda Y, Harashima H: “Strategies for fighting pandemic virus infections: Integration of virology and drug delivery”, J Control Release, 343:361-378(2022)
  2. Oshima K, Nakajima C, Hirata K, Hayashi H, Kodama EN, Fukushima Y, Suzuki Y, Kanamori H, Baba H, Aoyagi T, Tokuda K, Kaku M: “Disseminated tuberculosis with paradoxical reactions caused by a Mycobacterium tuberculosis strain belonging to the Indo-Oceanic lineage: An imported case in Japan”, J Infect Chemother, (2022)
  3. Kim H, Mori S, Kenri T, Suzuki Y: “Molecular characterization of Mycobacterium ulcerans DNA Gyrase and Identification of Mutations Reducing Susceptibility to Quinolones In Vitro”, Antimicrob Agents Chemother:AAC0190221(2022)
  4. Saito T, Hattori T, Okuya K, Manzoor R, Miyamoto H, Kajihara M, Takada A: “Molecular Mechanisms Underlying the Cellular Entry and Host Range Restriction of Lujo Virus”, mBio:e0306021(2022)
  5. Seikai T, Takada A, Hasebe A, Kajihara M, Okuya K, Sekiguchi Yamada T, Kakuguchi W, Konno S, Ohiro Y: “Gargling with povidone iodine has a short-term inhibitory effect on SARS-CoV-2 in patients with COVID-19”, J Hosp Infect, (2022)
  6. Soda K, Tomioka Y, Usui T, Uno Y, Nagai Y, Ito H, Hiono T, Tamura T, Okamatsu M, Kajihara M, Nao N, Sakoda Y, Takada A, Ito T: “Susceptibility of herons (family: Ardeidae) to clade 2.3.2.1 H5N1 subtype high pathogenicity avian influenza virus”, Avian Pathol:1-8(2022)
  7. Suzuki R, Yamasoba D, Kimura I, Wang L, Kishimoto M, Ito J, Morioka Y, Nao N, Nasser H, Uriu K, Kosugi Y, Tsuda M, Orba Y, Sasaki M, Shimizu R, Kawabata R, Yoshimatsu K, Asakura H, Nagashima M, Sadamasu K, Yoshimura K, Sawa H, Ikeda T, Irie T, Matsuno K, Tanaka S, Fukuhara T, Sato K, Consortium GtPJ: “Attenuated fusogenicity and pathogenicity of SARS-CoV-2 Omicron variant”, Nature, (2022)
  8. Taniguchi K, Ando Y, Kobayashi M, Toba S, Nobori H, Sanaki T, Noshi T, Kawai M, Yoshida R, Sato A, Shishido T, Naito A, Matsuno K, Okamatsu M, Sakoda Y, Kida H: “Characterization of the In Vitro and In Vivo Efficacy of Baloxavir Marboxil against H5 Highly Pathogenic Avian Influenza Virus Infection”, Viruses, 14(1)(2022)
  9. Watari K, Konnai S, Okagawa T, Maekawa N, Sajiki Y, Kato Y, Suzuki Y, Murata S, Ohashi K: “Enhancement of interleukin-2 production by bovine peripheral blood mononuclear cells treated with the combination of anti-programmed death-ligand 1 and cytotoxic T lymphocyte antigen 4 chimeric monoclonal antibodies”, J Vet Med Sci, 84(1):6-15(2022)
  10. Baidya S, Nishimoto Y, Sato S, Shimada Y, Sakurai N, Nonaka H, Noguchi K, Kido M, Tadano S, Ishikawa K, Li K, Okubo A, Yamada T, Orba Y, Sasaki M, Sawa H, Miyamoto H, Takada A, Nakamura T, Takaoka A: “Dual Effect of Organogermanium Compound THGP on RIG-I-Mediated Viral Sensing and Viral Replication during Influenza a Virus Infection”, Viruses, 13(9)(2021)
  11. Bazarragchaa E, Hiono T, Isoda N, Hayashi H, Okamatsu M, Sakoda Y: “Establishment of a mouse- and egg-adapted strain for the evaluation of vaccine potency against H3N2 variant influenza virus in mice”, J Vet Med Sci, (2021)
  12. Fujiki J, Yoshida SI, Nakamura T, Nakamura K, Amano Y, Nishida K, Nishi K, Sasaki M, Iwasaki T, Sawa H, Komatsuzawa H, Hijioka H, Iwano H: “Novel Virulent Bacteriophage ΦSG005, Which Infects Streptococcus gordonii, Forms a Distinct Clade among Streptococcus Viruses”, Viruses, 13(10)(2021)
  13. Fukushima Y, Sato T, Tsukamoto N, Nakajima C, Suzuki Y, Takahashi S, Yokota SI: “Clonal/subclonal changes and accumulation of CTX-M-type β-lactamase genes in fluoroquinolone-resistant Escherichia coli ST131 and ST1193 strains isolated during the past 12 years, Japan”, J Glob Antimicrob Resist, 27:150-155(2021)
  14. Hirose S, Notsu K, Ito S, Sakoda Y, Isoda N: “Transmission Dynamics of Bovine Viral Diarrhea Virus in Hokkaido, Japan by Phylogenetic and Epidemiological Network Approaches”, Pathogens, 10(8)(2021)
  15. Ichimiya T, Okamatsu M, Kinoshita T, Kobayashi D, Ichii O, Yamamoto N, Sakoda Y, Kida H, Kawashima H, Yamamoto K, Takase-Yoden S, Nishihara S: “Sulfated glycans containing NeuAcα2-3Gal facilitate the propagation of human H1N1 influenza A viruses in eggs”, Virology, 562:29-39(2021)
  16. Igarashi M, Hirokawa T, Takadate Y, Takada A: “Structural Insights into the Interaction of Filovirus Glycoproteins with the Endosomal Receptor Niemann-Pick C1: A Computational Study”, Viruses, 13(5)(2021)
  17. Kasajima N, Matsuno K, Miyamoto H, Kajihara M, Igarashi M, Takada A: “Functional Importance of Hydrophobic Patches on the Ebola Virus VP35 IFN-Inhibitory Domain”, Viruses, 13(11)(2021)
  18. Katada S, Fukuda A, Nakajima C, Suzuki Y, Azuma T, Takei A, Takada H, Okamoto E, Kato T, Tamura Y, Usui M: “Aerobic Composting and Anaerobic Digestion Decrease the Copy Numbers of Antibiotic-Resistant Genes and the Levels of Lactose-Degrading Enterobacteriaceae in Dairy Farms in Hokkaido, Japan”, Front Microbiol, 12:737420(2021)
  19. Kida Y, Okuya K, Saito T, Yamagishi J, Ohnuma A, Hattori T, Miyamoto H, Manzoor R, Yoshida R, Nao N, Kajihara M, Watanabe T, Takada A: “Structural Requirements in the Hemagglutinin Cleavage Site-Coding RNA Region for the Generation of Highly Pathogenic Avian Influenza Virus”, Pathogens, 10(12)(2021)
  20. Kim T, Huynh LT, Hirose S, Igarashi M, Hiono T, Isoda N, Sakoda Y: “Characteristics of Classical Swine Fever Virus Variants Derived from Live Attenuated GPE”, Viruses, 13(8)(2021)
  21. Kuroda Y, Okada A, Shimoda H, Miwa Y, Watamori A, Ishida H, Murakami S, Takada A, Horimoto T, Maeda K: “Influenza A virus infection in domestic ferrets”, Jpn J Infect Dis, (2021)
  22. Nakamura K, Fujiki J, Furusawa T, Nakamura T, Gondaira S, Sasaki M, Usui M, Higuchi H, Sawa H, Tamura Y, Iwano H: “Complete Genome Sequence of a Veterinary Pseudomonas aeruginosa Isolate, Pa12”, Microbiol Resour Announc, 10(26):e0039821(2021)
  23. Nakamura M, Uemura K, Saito-Tarashima N, Sato A, Orba Y, Sawa H, Matsuda A, Maenaka K, Minakawa N: “Synthesis and anti-dengue virus activity of 5-ethynylimidazole-4-carboxamide (EICA) nucleotide prodrugs”, Chem Pharm Bull (Tokyo), (2021)
  24. Ohno M, Sasaki M, Orba Y, Sekiya T, Masum MA, Ichii O, Sawamura T, Kakino A, Suzuki Y, Kida H, Sawa H, Shingai M: “Abnormal Blood Coagulation and Kidney Damage in Aged Hamsters Infected with Severe Acute Respiratory Syndrome Coronavirus 2”, Viruses, 13(11)(2021)
  25. Sato T, Usui M, Harada K, Fukushima Y, Nakajima C, Suzuki Y, Yokota SI: “Complete Genome Sequence of an mcr-9-Possessing Enterobacter asburiae Strain Isolated from a Cat in Japan”, Microbiol Resour Announc, 10(26):e0028121(2021
  26. Soda K, Ozaki H, Ito H, Usui T, Okamatsu M, Matsuno K, Sakoda Y, Yamaguchi T, Ito T: “Dynamics of invasion and dissemination of H5N6 highly pathogenic avian influenza viruses in 2016-2017 winter in Japan”, J Vet Med Sci, 83(12):1891-1898(2021)
  27. Suzuki A, Sawada K, Erdenebat T, Yamasaki T, Tobiume M, Suga K, Horiuchi M: “Monitoring of chronic wasting disease using real-time quaking-induced conversion assay in Japan”, J Vet Med Sci, (2021)
  28. Takeuchi H, Konnai S, Maekawa N, Takagi S, Ohta H, Sasaki N, Kim S, Okagawa T, Suzuki Y, Murata S, Ohashi K: “Canine Transforming Growth Factor-β Receptor 2-Ig: A Potential Candidate Biologic for Melanoma Treatment That Reverses Transforming Growth Factor-β1 Immunosuppression”, Front Vet Sci, 8:656715(2021)
  29. Usui M, Fukuda A, Suzuki Y, Nakajima C, Tamura Y: “Broad-host-range IncW plasmid harbouring tet(X) in Escherichia coli isolated from pigs in Japan”, J Glob Antimicrob Resist, 28:97-101(2021)
  30. Usui M, Tase J, Onozaki M, Suzuki Y, Tamura Y, Nakajima C: “Campylobacter Express Resistance Array for detecting the presence of fluoroquinolone- and macrolide-resistant Campylobacter jejuni and Campylobacter coli in broiler farms”, J Appl Microbiol, (2021)
  31. Yadav M, Igarashi M, Yamamoto N: “Dynamic residue interaction network analysis of the oseltamivir binding site of N1 neuraminidase and its H274Y mutation site conferring drug resistance in influenza A virus”, PeerJ, 9:e11552(2021)
  32. Yamada T, Sato S, Sotoyama Y, Orba Y, Sawa H, Yamauchi H, Sasaki M, Takaoka A: “RIG-I triggers a signaling-abortive anti-SARS-CoV-2 defense in human lung cells”, Nat Immunol, 22(7):820-828(2021)